Detection rates and high concentration of herpesvirus (Orthoherpesviridae) DNA in autopsy materials from patients with COVID-19 fatal outcome

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Abstract

Introduction. SARS-CoV-2 infection causes immune disorders that create conditions for the reactivation of human herpesviruses (HHVs). However, the estimates of the HHVs effect on the course and outcome of COVID-19 are ambiguous.

Аim to study the possible relationship between the HHV reactivation and the adverse outcome of COVID-19.

Materials and methods. Postmortem samples from the brain, liver, spleen, lymph nodes and lungs were obtained from 59 patients treated at the Moscow Infectious Diseases Hospital No.1 in 2021–2023. The group 1 comprised 39 patients with fatal COVID-19; group 2 (comparison group) included 20 patients not infected with SARS-CoV-2 who died from various somatic diseases. HHV DNA and SARS-CoV-2 RNA were determined by PCR.

Results. HHV DNA was found in autopsy samples from all patients. In group 1, EBV was most often detected in lymph nodes (94%), HHV-6 in liver (68%), CMV in lymph nodes (18%), HSV in brain (16%), VZV in lung and spleen (3% each). The detection rates of HHVs in both groups was similar. Important differences were found in viral load. In patients with COVID-19, the number of samples containing more than 1,000 copies of HHV DNA per 100,000 cells was 52.4%, in the comparison group – 16.6% (p < 0.002). An association has been established between the reactivation of HSV and HHV-6 and the severity of lung damage. Reactivation of EBV correlated with increased levels of liver enzymes.

Conclusion. Reactivation of HHVs in patients with fatal COVID-19 was associated with severe lung and liver damages, which indicates a link between HHV reactivation and COVID-19 deaths.

About the authors

Kirill I. Yurlov

National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation

Email: kir34292@yandex.ru
ORCID iD: 0000-0002-4694-2445
SPIN-code: 1767-5652

Researcher

Russian Federation, 123098, Moscow

Sofia A. Yakushina

National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation; Department of Health, Moscow Infectious Clinical Hospital No. 1

Email: sofia.iakushina@gmail.com
ORCID iD: 0000-0003-0507-0174
SPIN-code: 9585-8019

junior researcher, infectious disease physician

Russian Federation, 125367, Moscow; 123098, Moscow

Natalya E. Fedorova

National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation

Email: ninani@mail.ru
ORCID iD: 0000-0001-8466-7993
SPIN-code: 1090-2763

Senior Researcher

Russian Federation, 123098, Moscow

Lidiia B. Kisteneva

National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation; Department of Health, Moscow Infectious Clinical Hospital No. 1

Email: lidia.kisteneva@gmail.com
ORCID iD: 0000-0001-7336-409X
SPIN-code: 9205-3670

Dr. Sci. (Medicine), Leading Researcher

Russian Federation, 125367, Moscow; 123098, Moscow

Elena I. Kelly

Department of Health, Moscow Infectious Clinical Hospital No. 1

Email: ekelly@yandex.ru
ORCID iD: 0009-0000-2718-9462

specialist in pathological anatomy

Russian Federation, 125367, Moscow

Alexander A. Kanibolotsky

Sklifosovsky Research Institute For Emergency Medicine, «Sklifosovsky Institute»; Research Institute for Healthcare and Medical Management of Moscow Healthcare Department

Email: dr.kaa@mail.ru
ORCID iD: 0000-0001-6123-8387
SPIN-code: 3976-1662
Scopus Author ID: 57223849355
ResearcherId: HLG-3242-2023

Candidate of Medical Sciences, Associate Professor, Head of the Pathoanatomical Department, Head of the Department of Medical Education for Pathological Anatomy of the Research Institute of Healthcare Organization and Medical Management of the Moscow Department of Health

Russian Federation, 129090, Moscow; 115184, Moscow

Yevgeniy N. Ivkin

Sklifosovsky Research Institute For Emergency Medicine, «Sklifosovsky Institute»; Research Institute for Healthcare and Medical Management of Moscow Healthcare Department

Email: evgenuivkin@rambler.ru
ORCID iD: 0009-0004-2609-1788

pathologist doctor Research Institute of Emergency Medicine, specialist in pathological anatomy Department of Medical Education for Pathological Anatomy

Russian Federation, 129090, Moscow; 115184, Moscow

Natalia A. Antipiat

Department of Health, Moscow Infectious Clinical Hospital No. 1

Author for correspondence.
Email: natadog70@bk.ru
ORCID iD: 0000-0001-8578-2838

deputy chief physician Infectious Diseases

Russian Federation, 125367, Moscow

Igor N. Turin

Department of Health, Moscow Infectious Clinical Hospital No. 1

Email: tyurin.dti@yandex.ru
ORCID iD: 0000-0002-5696-1586
SPIN-code: 6755-0576

chief physician Infectious Diseases

Russian Federation, 125367, Moscow

Victor F. Larichev

National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation

Email: vlaritchev@mail.ru
ORCID iD: 0000-0001-8262-5650
SPIN-code: 5826-1430

Dr. Sci. (Medicine), Leading Researcher

Russian Federation, 123098, Moscow

Natalia A. Demidova

National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation

Email: ailande@yandex.ru
ORCID iD: 0000-0003-1961-9789
SPIN-code: 8759-0277

Researcher

Russian Federation, 123098, Moscow

Ekaterina I. Lesnova

National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation

Email: wolf252006@yandex.ru
ORCID iD: 0000-0002-2801-6843
SPIN-code: 9901-8607

Senior Researcher

Russian Federation, 123098, Moscow

Regina R. Klimova

National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation

Email: rklimova@yandex.ru
ORCID iD: 0000-0002-4147-8444
SPIN-code: 8286-6108

Researcher, Gamaleya NRC of Epidemiology and Microbiology

Russian Federation, 123098, Moscow

Olga V. Masalova

National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation

Email: ol.mas@mail.ru
ORCID iD: 0000-0001-5571-5669
SPIN-code: 7210-0870

Dr. Sci. (Biology), Leading Researcher, Head of the Laboratory

Russian Federation, 123098, Moscow

Alla A. Kushch

National Research Center for Epidemiology and Microbiology, Ministry of Health of the Russian Federation

Email: vitallku@mail.ru
ORCID iD: 0000-0002-3396-5533
SPIN-code: 6964-1715

Professor, Dr. Sci. (Biology), Leading Researcher

Russian Federation, 123098, Moscow

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Supplementary files

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2. Fig. 1. The frequency of herpesvirus detection in autopsy materials in patients with COVID-19 fatal outcome (group 1) and without COVID-19 (group 2). Horizontally – the designation of herpesviruses; vertically – the frequency of detection of herpesvirus DNA, in %. COVID-19(+) – 1st group patients with fatal COVID-19; COVID-19(−) – 2nd group patients who died without COVID-19. * – p < 0.05.

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3. Fig. 2. Concentrations of herpesvirus DNA in the organs from patients who died with a confirmed diagnosis of COVID-19 (COVID +) or as a result of somatic non-infectious diseases (COVID−). On X-axis – the designations of the organs from which autopsy materials were obtained; on Y-axis – the amount of HHV DNA in copies per 100 thousand cells. The minimum and maximum values of DNA concentration are presented, the lines indicate the medians. * – p < 0.05..

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Copyright (c) 2024 Yurlov K.I., Yakushina S.A., Fedorova N.E., Kisteneva L.B., Kelly E.I., Kanibolotsky A.A., Ivkin Y.N., Antipiat N.A., Turin I.N., Larichev V.F., Demidova N.A., Lesnova E.I., Klimova R.R., Masalova O.V., Kushch A.A.

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