Doklady Biological Sciences

ISSN (print): 2686-7389

Media registration certificate: PI No. FS 77-77141 dated 06.11.2019

Founder: Russian Academy of Sciences

Editor-in-Chief Gabibov Alexander Gabibovich

Number of issues per year: 6

Indexation: RISC, CrossRef, Web of science, White List (level 2)

 

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Vol 525, No 1 (2025)

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Articles

MLE/DHX9, WITHOUT HELICASE ACTIVITY, ACTIVATES CONSTITUTIVE EXPRESSION OF NUCLEAR RECEPTOR GENES IN Drosophila melanogaster
Zolin I.A., Grigel A.A., Georgieva S.G., Nikolenko J.V.
Abstract
MLE/DHX9 is a DNA/RNA helicase that performs important functions in gene expression regulation in eukaryotes. However, the specific role of MLE and the mechanisms by which this regulation is carried out remain poorly understood. This work is devoted to the study of the effect of MLE on the constitutive expression of nuclear receptor genes in D. melanogaster. The nuclear receptors Eip75B, DHR3, and Hr4 are conserved in evolution and have orthologs in humans. In D. melanogaster, Eip75B, DHR3, and Hr4 are activated in the ecdysone cascade, but they are also expressed at a stable level in various tissues and at various stages of development. The experiments were carried in vivo at the imago stage in females and in S2 cell culture. Taken together, the results indicate that MLE is involved in activating the expression of these genes. At the same time, the helicase activity of MLE is not necessary for activation. The results obtained extend knowledge about the functions of MLE beyond dosage compensation, as potentially conserved in evolution, and contribute to understanding the mechanisms of regulation of nuclear receptor expression.
Doklady Biological Sciences. 2025;525(1):595–600
pages 595–600 views
ELOVL5 REGULATES FERROPTOSIS IN BREAST CANCER CELLS
Klycheva K.V., Razumovskaya A.V., Shatsillo A.D., Mastykina M.D., Kulagin T.A., Silkina M.O., Nikulin S.V.
Abstract
Today, breast cancer (BC) occupies a leading position in prevalence and mortality from oncological diseases among the female population worldwide. Ferroptosis is a special type of cell death associated with peroxidation of intracellular lipids. It is a promising option for the therapy of BC resistant to traditional methods of treatment. The ELOVL5 gene, involved in the elongation of long-chain polyunsaturated fatty acids (LC-PUFA), was previously associated with BC progression. In this work, the effect of ELOVL5 knockdown on the dynamics of ferroptosis induction in MDA-MB-231 cells under the influence of docosahexaenoic acid (DHA) and erastin was investigated. A comparative analysis of changes in the expression of individual genes under the influence of these agents was also carried out. It was shown that a decrease in ELOVL5 expression increases cell sensitivity to both agents, while DHA causes earlier cell death. The protective effect of ferroptosis inhibitors (ferrostatin-1 and deferoxamine) confirmed the involvement of this pathway in the observed effects. Differences in the expression of genes associated with oxidative stress, inflammation and proliferation were also revealed, indicating different molecular trajectories of ferroptosis in cells with different ELOVL5 gene expression. Thus, the present study deepens the understanding of the contribution of the ELOVL5 gene to the regulation of ferroptosis and can be used in the development of targeted therapy for breast cancer.
Doklady Biological Sciences. 2025;525(1):601–610
pages 601–610 views
EVALUATION OF THE ANTITUMOR EFFECT OF HIGH-ENERGY PROTONS, HELIUM IONS AND CARBON DURING IRRADIATION OF EHRLICH ADENOCARCINOMA ASCITES CELLS ex vivo
Balakin V.E., Strelnikova N.S., Rozanova O.M., Smirnova E.N., Belyakova T.A., Smirnov A.V.
Abstract
The regularities of tumor induction and growth in mice were studied during a single ex vivo irradiation of ascites cells of Ehrlich adenocarcinoma with a beam of protons, helium ions (4He) and carbon ions (12C) at doses of 10 Gy, 20 Gy and 30 Gy. It was shown that when tumor cells were exposed to all types of radiation, a dose-dependent increase in the antitumor effect was observed in the latent period of tumor appearance, the frequency of their induction and tumor growth inhibition. According to all indicators, 12C had the greatest antitumor effect, 4He occupied an intermediate position, and protons caused the least effect.
Doklady Biological Sciences. 2025;525(1):611–618
pages 611–618 views
STRUCTURAL AND FUNCTIONAL FEATURES OF MELATONIN BIOSYNTHESIS GENES SNAT1 AND SNAT2 IN TOMATO AND GARLIC PLANTS
Anisimova O.K., Shchennikova A.V., Kochieva E.Z.
Abstract
A comparative structural-phylogenetic and expression analysis of the SNAT1 and SNAT2 genes of tomato Solanum lycopersicum and garlic Allium sativum was performed. It was shown that the SNAT1 and SNAT2 are intron-rich and intronless genes, respectively, and may have different evolutionary origins. It was predicted that, unlike the chloroplast protein SNAT1, SNAT2 has features of chloroplast-mitochondrial localization. The highest expression level of SNAT1 and SNAT2 was detected (in silico and qRT-PCR) in leaves, while in roots and mature storage organs it was significantly lower; SNAT2 was not expressed in garlic roots and bulbs. It was found that the expression level of SNAT2 in tomato plant organs is higher than the expression level of SNAT1, while for garlic the opposite ratio was observed.
Doklady Biological Sciences. 2025;525(1):619–624
pages 619–624 views
INFLUENCE OF TEMPERATURE ON SALICYLATE-INDUCED COMPONENTS IN TOMATO PLANTS IMMUNE SYSTEM UNDER INVASION OF ROOT-KNOT NEMATODE Meloidogyne incognita
Zinovieva S.V., Udalova Z.V., Khasanov F.K., Gins M.S.
Abstract
The tomato gene Mi-1,2 is currently the only commercially available source of resistance to the root-knot nematode Meloidogyne incognita, which loses activity when soil temperatures exceed 28°C. The study aimed to investigate the components of the tomato immune system to root-knot nematode associated with salicylic acid (SA) at elevated (34 °C) and normal (25 °C) temperatures. The obtained results showed that the Mi-1,2-mediated immune response is disrupted at 34° C. At elevated temperatures in plants infested with nematodes, the synthesis of salicylic acid and the activity of phenylalanine ammonia lyase are reduced, and catalase is inhibited, a decrease in the activity of which was discovered at the stage of nematode penetration into the roots and the creation of feeding structures – giant cells. Elevated temperature decreased the activity of the PR-1 gene, a marker of systemic plant resistance. These results provide important information on the temperature sensitivity of the Mi-1,2 resistance gene and the effect of elevated temperature on SA-dependent components of the immune system that are associated with tomato resistance to the nematode.
Doklady Biological Sciences. 2025;525(1):625–630
pages 625–630 views
20-HYDROXYECDYSONE MODULATES GENE-SPECIFIC IMMUNE RESPONSE TO Metarhizium anisopliae INFECTION IN Drosophila melanogaster S2 CELL CULTURE
Ghassah M., Ulianova Y.A., Georgiev P.G., Shidlovskii Y.V., Kachaev Z.M.
Abstract
The interplay between innate immunity and other signaling pathways remains a central focus in immunological research, with considerable ongoing investigation. Of particular interest are studies exploring the influence of the hormonal system on the innate immunity of Drosophila melanogaster. In this study, we performed a comprehensive analysis of the combined effects of the insect hormone 20- hydroxyecdysone (20E) and spores from the fungus Metarhizium anisopliae on the innate immune response in D. melanogaster S2 cell culture, addressing this interaction for the first time. Our results demonstrate that, compared to cells exposed solely to M. anisopliae spores, pretreatment with 20E followed by fungal challenge led to a reduction in the transcription of antimicrobial peptide genes CercopinA1 and Drosocin. In contrast, expression of the Metchnikovin (Mtk) gene was upregulated. No significant alterations were observed in the transcription levels of Drosomycin or in genes encoding key receptors, transcription factors, or other components of innate immune signaling pathways. Furthermore, knockdown of the transcription factor Relish markedly decreased Mtk expression, highlighting its central role in hormone- modulated antifungal immunity. These findings reveal complex hormonal- immune crosstalk that differentially regulates AMP gene expression in Drosophila.
Doklady Biological Sciences. 2025;525(1):633–636
pages 633–636 views
SALICYLATE-INDUCED CHANGES OF PROTEIN SECRETION INTO APOPLAST IN PEA ROOTS IS NOT ALWAYS ASSOCIATED WITH INCREASED EXPRESSION OF GENES ENCODING THEM
Egorova A.M.
Abstract
The work presents the results of the analysis of the effect of phytohormone salicylic acid on the secretion of proteins to the apoplast of the pea seedlings roots. It is shown that the secretion of a number of defense proteins – β-1,3-glucanase, acid and alkaline endochitinase, disease resistance response protein and protease inhibitors is increased, but there is no activation of the expression of genes encoding these proteins. A distinctive feature of the pea roots response to the salicylic acid was the activation of the expression of genes encoding isoforms of chitinase-like proteins and the secretion of these proteins into the apoplast.
Doklady Biological Sciences. 2025;525(1):636–643
pages 636–643 views
SYNTHESIS AND PHARMACOKINETICS OF NANOSIZED NH2-UiO-66 (Zr) METAL-ORGANIC FRAMEWORKS
Mirkasymov A.B., Rodionov V.I., Pokhorukov D.A., Griaznova O.Y., Ivshina N.K., Lunyov I.V., Zelepukin I.V., Deyev S.M.
Abstract
The application of porous nanomaterials in drug delivery offers a promising strategy to mitigate the adverse side effects of chemotherapy. In this study, we report the synthesis of nanosized NH2-UiO-66 (Zr) metal-organic frameworks as carriers of doxorubicin. The nanoparticles exhibited high crystallinity with an average size of 44 nm. Surface functionalization with polyethylene glycol (PEG) markedly enhanced their colloidal stability under physiological conditions. Coated NH2-UiO-66 (Zr)@PEG particles demonstrated prolonged circulation in the bloodstream and a significant reduction of nonspecific accumulation in organs with high vascularization. Importantly, these particles retained their capacity for doxorubicin loading, highlighting their potential for drug delivery.
Doklady Biological Sciences. 2025;525(1):644–648
pages 644–648 views
IMPACT OF INTERACTIONS BETWEEN THREE SU(HW)-DEPENDENT INSULATORS AND THE WHITE GENE ENHANCER ON LONG-DISTANCE TRANSCRIPTIONAL REGULATION IN Drosophila melanogaster
Melnikova L.S., Georgiev P.G., Golovnin A.K.
Abstract
Special regulatory elements, insulators, either block enhancer-promoter contacts or facilitate long-distance interactions between regulatory elements of the genome. Two identical DNA sequences containing four Su(Hw) protein binding sites were shown to interact in a transgenic system and ensure maximal activation of the yellow and white promoters by specific enhancers located 28 kb apart. We demonstrated that three Su(Hw) insulators are also capable of regulating specific enhancer-promoter contacts at distance 28 kb. The effect of multiple insulators on transcription depends on the relative positions of insulators, enhancers, and promoters. We confirmed that the eye enhancer directly interacts with the Su(Hw) insulator and participates in the formation of chromatin loops. These data indicate that insulators are multifunctional elements that organize chromatin structure and directly regulate gene activity.
Doklady Biological Sciences. 2025;525(1):649–655
pages 649–655 views
SAGA TRANSCRIPTION COACTIVATOR COMPLEX IS ASSOCIATED WITH HISTONE LOCUS BODY HLB
Yakusheva Y.A., Georgieva S.G., Kurshakova M.M.
Abstract
The chromatin of histone genes is associated with specific nuclear biomolecular condensate called the Histone Locus Body (HLB). HLB is the compartment where the transcription of histone genes and processing of their pre-mRNAs take place coordinated with the cell cycle. In this work, the transcriptional histone acetyltransferase coactivator complex SAGA is described as a component of the HLB. Specific subunits of the SAGA complex, Gcn5 and Sgf11 proteins, are present on the chromatin locus of the histone gene cluster and interact with known constant specific structural components of the HLB: Mxc, FLASH, and Mute proteins.
Doklady Biological Sciences. 2025;525(1):656–661
pages 656–661 views
EXPRESSION OF HOX GENES IN THE EARLY DEVELOPMENT OF THE SAND DOLLAR Scaphechinus mirabilis (ECHINODERMATA, ECHINOIDEA)
Ezhova O.V., Ageenko N.V., Kiselev K.V., Malakhov V.V.
Abstract
The data obtained by now show that the pattern of Hox-gene expression differs between regular and irregular sea urchins. In two previously studied species of Regularia (Strongylocentrotus purpuratus and Str. intermedius), the expression of most Hox cluster genes was activated only after the formation of the pluteus, and only the Hox7, 11/13b, and 11/13c genes were expressed at the blastula stage. In contrast, in the only studied species of Irregularia, Peronella japonica, PjHox7, 9/10, 11/13b, and 11/13c genes were expressed at the blastula and gastrula stages, PjHox1, 7, 8, 9/10, 11/13a, and 11/13b genes were expressed at the prism stage, and most Hox cluster genes were activated at the pluteus stage. In the irregular sea urchin Scaphechinus mirabilis studied in this work, all Hox genes were silent at early stages, except for SmHox11/13b, which was expressed at the gastrula stage, and most Hox cluster genes were activated only at the pluteus stage. Thus, the expression of Hox cluster genes in Sc. mirabilis is similar to that of the regular sea urchins Str. purpuratus and Str. intermedius, and differs from that of the other species of irregular sea urchins, P. japonica.
Doklady Biological Sciences. 2025;525(1):662–667
pages 662–667 views
THE EFFECT OF EARLY STRESS ON Drosophila melanogaster DEVELOPMENT AND FERTILITY
Adonyeva N.V., Efimov V.M., Gruntenko N.E.
Abstract
Stress at early stages of development is known to affect a lot of physiological traits in mammals, but much less is known concerning its effect on physiology of Holometabola insects. In this study, we report for the first time that heat stress experienced by 3rd instar larvae of Drosophila melanogaster (32 °C, 48 hours) results in a decrease in egg-to-imago development rate. Such stress also results in a drop in fertility at the beginning of the reproduction period (the first 48 hours after the oviposition onset). The data obtained are indicative of the transition of physiological changes caused by early stress through metamorphosis. Thus, the results of our study support the idea of metamorphosis not erasing the influence of factors that affected the insect before its start universally among Holometabola.
Doklady Biological Sciences. 2025;525(1):668–671
pages 668–671 views
DUAL EFFECTS OF ACETYLCHOLINE IN NEURO-MAST CELL INTERACTIONS
Kutukova N.A., Trulioff A.S., Polevshchikov A.V., Shamova O.V.
Abstract
Neuro-mast cell units are one of the main elements of neuro-immune cooperation, providing a structural and functional connection between mast cells (MCs) and autonomic nerve fibers. Although the immunoregulatory action of acetylcholine (ACh) is well established, the exact point of its influence on MC remains unclear. This study compared the effects of muscarinic versus nicotinic receptors binding on secretory activity of HMC-1 cells. It was found out that ACh triggers activation of intact MCs mainly through the M3 muscarinic receptor, but suppresses degranulation in stimulated MCs via the nicotinic α7 acetylcholine receptor (α7 nAChR). Our findings show that changes in the receptor pattern within neuro-mast cell units underlie the dual effects of ACh and enable MCs to switch functions under inflammation: switching pro-inflammatory activity in the acute phase on anti-inflammatory action during reparation.
Doklady Biological Sciences. 2025;525(1):672–676
pages 672–676 views
SYNAPTIC VESICLE EXOCYTOSIS AND ENDOCYTOSIS IN MOTOR NERVE ENDINGS OF TRANSGENIC MICE MODELING AMYOTROPHIC LATERAL SCLEROSIS UPON ANTIOXIDANT TREATMENT AND GENE-CELL THERAPY
Grigoryev P.N., Zefirov A.L., Mukhamedzyanov R.D., Salafutdinov I.I., Islamov R.R., Mukhamedyarov M.A.
Abstract
In experiments on the motor nerve endings of the diaphragm of transgenic mice with a model of amyotrophic lateral sclerosis, the processes of synaptic vesicles exocytosis and endocytosis were studied in case of use of antioxidant drug edaravone and gene-cell (use of umbilical cord blood mononuclear cells producing VEGF, GDNF and NCAM) therapies. It was shown that the both used therapy types did not cause significant change in FM 1-43 fluorescent dye loading by synaptic vesicle endocytosis processes. Gene-cell therapy lead to facilitated rate of the dye unloading by synaptic vesicle exocytosis but antioxidant drug therapy did not change the FM 1-43 unloading rate. The findings allow to suppose that used gene-cell therapy lead to facilitated synaptic vesicle transportation rate to release sites during high-frequency stimulation in motor nerve endings of transgenic mice.
Doklady Biological Sciences. 2025;525(1):677–682
pages 677–682 views
GENERATION OF LONG-LIVED CHO CELLS SUITABLE FOR PRODUCTION OF AFUCOSYLATED ANTIBODIES AND FC-FUSION PROTEINS
Kolesov D.E., Orlova N.A., Vorobiev I.I.
Abstract
Using genome editing, we created a homozygous α-(1,6)-fucosyltransferase (FUT8⁻/⁻) knockout in apoptosis-resistant CHO 4BGD cells, yielding the new 4BGD-F cell line. Combining CRISPR/Cas9 with paired gRNAs and non-specific puromycin selection yielded a cell population with an exceptionally high FUT8 knockout frequency, obviating the need for metabolic enrichment with lentil lectin (Lens culinaris agglutinin, LCA). Despite impaired clonogenicity of the knockout cells, we successfully isolated multiple clonal cell lines harboring extensive biallelic FUT8 deletions. Isolated clones with biallelic deletions retained key parental line characteristics: viability >90% in 17-day fed-batch cultures at high densities (>15×10⁶ cells/mL), and rapid selectability using both dihydrofolate reductase and glutamine synthetase systems. Mass spectrometric analysis of the test protein GLP1-Fc secreted by 4BGD-F cells confirmed the absence of N-glycan fucosylation. The CHO 4BGD-F cell line provides a valuable platform for producing afucosylated antibodies with enhanced antibody-dependent cellular cytotoxicity.
Doklady Biological Sciences. 2025;525(1):683–692
pages 683–692 views
MICROPLASTICS IN THE GASTROINTESTINAL TRACT OF STRIPED FIELD MOUSE (Apodemus agrarius PALLAS, 1771) IN THE PARKS OF MOSCOW
Karmanova T.N., Belenkova V.V., Feoktistova N.Y., Meshchersky S.I., Surov A.V.
Abstract
For the first time, microplastic particles were isolated and partially identified from the contents of the gastrointestinal tract of striped field mouse (Apodemus agrarius Pallas, 1771) living in two parks in Moscow – in Neskuchny Garden (n=5) and Terletsky Park (n=1). Microplastics were found in the gastrointestinal tract of all the studied individuals. The samples were dominated by small multicolored fibers. The chemical composition of the longest ones (> 4 mm) was analyzed using a Raman microscope (Russia). A toxic copolymer of vinylidene chloride and acrylonitrile was identified in the composition (72.4% match). Presumably, artificial coverings in the park or films may be its source. The data obtained will contribute to the development of measures to control MP pollution in urban ecosystems and are important for assessing the risk level for other vertebrate species, including humans.
Doklady Biological Sciences. 2025;525(1):693–697
pages 693–697 views
A NEW LATE PLEISTOCENE AVIFAUNA FROM YAKUTIA (EASTERN SIBERIA)
Zelenkov N.V., Maslintsyna M.P., Lavrov A.V., Gimranov D.O., Pavlov I.S., Kandyba A.V., Protopopov A.V.
Abstract
A new fossil avifauna, dated to an unspecified Upper Pleistocene, is reported from the recently discovered Khondu locality in central Yakutia. Based on materials collected in 2023–2024, at least 25 bird taxa were identified belonging to the families Phasianidae (Lagopus lagopus), Anatidae (10 species), Podicipedidae (2 species), Scolopacidae (5 species), Accipitridae (Buteo sp., Circus sp.), Alaudidae (Eremophila alpestris), and Turdidae (1 species). This is the northernmost representative Pleistocene fossil bird fauna in Eastern Siberia and the second from Yakutia. The avifauna of Khondu is generally similar to that from the Upper Pleistocene layers of Dyuktai Cave (southeastern Yakutia), but differs in the presence of several species (in particular, the common pochard Aythya ferina), indicating more favorable environmental conditions during the formation of the taphocoenosis. The presence of arboreal vegetation is indicated by the presence of goldeneye (Bucephala clangula) remains, including those of subadult individuals. Of particular interest are the finds of two species of waders—the ringed plover (Charadrius hiaticula) and the Far Eastern curlew (Numenius madagascariensis). This is the first find of the ringed plover in the Pleistocene of Asia, and the first find of the Far Eastern curlew in the fossil record.
Doklady Biological Sciences. 2025;525(1):698–705
pages 698–705 views
EXPRESSION OF GENES ENCODING TRANSCRIPTIONAL MYOGENIC REGULATORY FACTORS IN RAINBOW TROUT (Oncorhynchus mykiss WALB.) IN RESPONSE TO THE USE OF COMMERCIAL FEEDS WITH DIFFERENT COMPOSITIONS
Rodin M.A., Kuznetsova M.V., Krupnova M.Y., Kuritsyn A.E., Murzina S.A., Nemova N.N.
Abstract
The expression level of genes encoding myogenic regulatory factors (myf5, myod2, myog), myostatin (mstn1a, mstn1b) and muscle protein myosin (myhc) in the muscles of rainbow trout Oncorhynchus mykiss Walb. three size groups (SG) under the influence of two types of commercial feeds with different compositions. Differences in the expression level of myhc, myf5, myog, mstn1a in the muscles of fish were established depending on the feed consumed, which were expressed for smaller individuals (up to 1000 g). This result suggests that the composition of the feed, including the quantitative ratio of ingredients, the source of proteins, fats and carbohydrates in the feed, affect the processes of muscle growth regulation in the early periods of growth and development of trout. The results of the study complement the information available in the literature on the features of myogenesis regulation in organisms depending on external factors.
Doklady Biological Sciences. 2025;525(1):706–713
pages 706–713 views