Analyzing the Data Bank of Proteins Space Structures (PDB): A Geometrical Approach


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A geometrical approach to the analysis of a data bank containing information on space structures of proteins is suggested. As a result of the analysis, several relationships concerning possible conformations are found, and also there is obtained a list of polypeptides whose structures differ essentially from typical concepts of the 3D-structure of proteins. Those deviations could indicate possible errors and gaps of the interpreting models in use, as well as some new unknown relations and rules.

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E. Vilkul

Department of Probability Theory, Faculty of Mechanics and Mathematics, Lomonosov Moscow State University

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Email: elena.tuzhilina@mail.ru
俄罗斯联邦, Moscow

A. Ivanov

Department of Differential Geometry and Applications, Faculty of Mechanics and Mathematics, Lomonosov Moscow State University; Department of Mathematical Modeling, Bauman Moscow Technical State University

Email: elena.tuzhilina@mail.ru
俄罗斯联邦, Moscow; Moscow

A. Mishchenko

Department of High Geometry and Topology, Faculty of Mechanics and Mathematics, Lomonosov Moscow State University

Email: elena.tuzhilina@mail.ru
俄罗斯联邦, Moscow

Th. Popelenskii

Department of Differential Geometry and Applications, Faculty of Mechanics and Mathematics, Lomonosov Moscow State University

Email: elena.tuzhilina@mail.ru
俄罗斯联邦, Moscow

A. Tuzhilin

Department of Differential Geometry and Applications, Faculty of Mechanics and Mathematics, Lomonosov Moscow State University

Email: elena.tuzhilina@mail.ru
俄罗斯联邦, Moscow

K. Shaytan

Department of Bioengineering, Biological Faculty, Lomonosov Moscow State University

Email: elena.tuzhilina@mail.ru
俄罗斯联邦, Moscow

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