Modeling of primary photosynthetic processes using the kinetic Monte Carlo method

Abstract

Processes that occur in the ensemble of photosynthetic electron transport systems have been modeled using a kinetic Monte Carlo method. The size of a simulated ensemble (3–5 million elementary photosynthetic chains) corresponds to the number of photosynthetic reaction centers in a plant cell. The method enables one to modify the structure of a model system according to different concepts of the organization of processes in a photosynthetic membrane. Using this model, the experimental kinetics of the chlorophyll fluorescence induction associated with the Photosystem II and the redox transformations of a photoactive pigment of the Photosystem I have been successfully reproduced. The model was verified by comparing the calculated fluorescence induction curves to experimental curves, obtained in the presence of various photosynthesis inhibitors and under temperature inactivation of the Photosystem II donor side.